Index

B

bca_survival module bca_survival.analyzer module bca_survival.models module bca_survival.preprocessing module bca_survival.tools module

bca_survival.tools.bca_merger module bca_survival.tools.bca_totalseg_extraction module bca_survival.tools.pdf_report_extractor module bca_survival.tools.results_converter module bca_survival.utils module BCASurvivalAnalyzer (class in bca_survival.analyzer)

C

calculate_age() (in module bca_survival.utils) calculate_days() (in module bca_survival.preprocessing) calculate_vif() (in module bca_survival.models) check_and_remove_negative_days() (in module bca_survival.preprocessing) check_multicollinearity() (in module bca_survival.models) clean_dates() (in module bca_survival.utils) compute_ratios() (in module bca_survival.preprocessing)

convert_excel_file() (in module bca_survival.tools.results_converter) convert_to_csv() (in module bca_survival.tools.results_converter) convert_to_pdf_fpdf() (in module bca_survival.tools.results_converter) convert_to_pdf_win32() (in module bca_survival.tools.results_converter) convert_to_txt() (in module bca_survival.tools.results_converter) create_event_date_column() (in module bca_survival.preprocessing) create_output_folders() (in module bca_survival.tools.results_converter)

D

df (bca_survival.analyzer.BCASurvivalAnalyzer attribute)

df_negative_days (bca_survival.analyzer.BCASurvivalAnalyzer attribute)

E

encrypt_pdf() (in module bca_survival.tools.pdf_report_extractor)

event_col (bca_survival.analyzer.BCASurvivalAnalyzer attribute) event_date_col (bca_survival.analyzer.BCASurvivalAnalyzer attribute)

G

generate_kaplan_meier_plot() (in module bca_survival.models)

K

kaplan_meier_plot() (bca_survival.analyzer.BCASurvivalAnalyzer method)

M

main() (in module bca_survival.tools.bca_merger) (in module bca_survival.tools.bca_totalseg_extraction) (in module bca_survival.tools.pdf_report_extractor) (in module bca_survival.tools.results_converter) main_cli() (in module bca_survival.tools.bca_totalseg_extraction) make_quantile_split() (in module bca_survival.utils) make_quantile_split_outter_vs_middle() (in module bca_survival.utils) merge_files() (in module bca_survival.tools.bca_merger) module bca_survival bca_survival.analyzer bca_survival.models bca_survival.preprocessing bca_survival.tools bca_survival.tools.bca_merger bca_survival.tools.bca_totalseg_extraction bca_survival.tools.pdf_report_extractor bca_survival.tools.results_converter bca_survival.utils

multivariate_cox_regression() (bca_survival.analyzer.BCASurvivalAnalyzer method)

P

perform_multivariate_cox_regression() (in module bca_survival.models) perform_univariate_cox_regression() (in module bca_survival.models) preprocess_data() (bca_survival.analyzer.BCASurvivalAnalyzer method) process_bca_measurements() (in module bca_survival.tools.bca_totalseg_extraction)

process_directory() (in module bca_survival.tools.results_converter) process_json_files() (in module bca_survival.tools.bca_totalseg_extraction) process_pdfs() (in module bca_survival.tools.pdf_report_extractor) process_totalseg_measurements() (in module bca_survival.tools.bca_totalseg_extraction)

S

standardize (bca_survival.analyzer.BCASurvivalAnalyzer attribute)

standardize_columns() (in module bca_survival.models) start_date_col (bca_survival.analyzer.BCASurvivalAnalyzer attribute)

U

univariate_cox_regression() (bca_survival.analyzer.BCASurvivalAnalyzer method)